GCHP
Getting Started
Quickstart Guide
System Requirements
Key References
User Guide
Download the model
Compile
Create a Run Directory
Download Input Data
Run the model
Configuration files
Configure a run
Output Files
Plot Output Data
Debugging
Supplemental Guides
Load software into your environment
Build required software with Spack
GEOS-Chem input data on AWS cloud
Set up AWS ParallelCluster
Cache Input Data on Fast Drives
Use GCHP Containers
Stretched-Grid Simulation
Output Along a Track
Manage a data archive with bashdatacatalog
Archive output with the History diagnostics
Work with netCDF files
Prepare COARDS-compliant netCDF files
Customize simulations with research options
Understand what error messages mean
Debug GEOS-Chem and HEMCO errors
View GEOS-Chem species properties
Update chemical mechanisms with KPP
View related documentation
Help & Reference
Support Guidelines
Contributing Guidelines
Editing this User Guide
Git Submodules
Terminology
GCHP version history
Upload to Spack
GCHP
Index
Edit on GitHub
Index
Symbols
|
_
|
A
|
B
|
C
|
D
|
E
|
F
|
G
|
H
|
I
|
L
|
M
|
N
|
O
|
P
|
R
|
S
|
T
|
U
|
W
|
X
Symbols
$PATH
${HOME}
,
[1]
_
_FillValue
command line option
A
absolute path
all
command line option
,
[1]
,
[2]
,
[3]
allPES.log
command line option
AWS
command line option
B
BackgroundVV
command line option
batch
command line option
boundary_layer
command line option
build
build directory
C
cap_restart
command line option
CC
,
[1]
cdo
command line option
checkpoint file
command line option
_FillValue
all
,
[1]
,
[2]
,
[3]
allPES.log
AWS
BackgroundVV
batch
boundary_layer
cap_restart
cdo
constant
,
[1]
Contact
Conventions
DD_AeroDryDep
DD_DustDryDep
DD_DvzAerSnow
DD_DvzAerSnow_Luo
DD_DvzMinVal
DD_F0
DD_Hstar_Old
DD_KOA
decay_of_another_species
Density
e.g.
efolding
EGRESS
Filename
Format
Formula
FullName
gchp.YYYYMMSS_HHmmSSz.log
GCPy
Globus
gregorian
halflife
HEMCO
Henry_CR
Henry_CR_Luo
Henry_K0
Henry_K0_Luo
Henry_pKa
History
HistoryCollectionName.rcx
HTTP
Is_Advected
Is_Aerosol
Is_DryAlt
Is_DryDep
Is_Gas
Is_Hg0
Is_Hg2
Is_HgP
Is_HygroGrowth
Is_Photolysis
Is_RadioNuclide
Is_Tracer
lat
lat:axis
lat:long_name
lat:units
lat_zone
,
[1]
lev
lev:axis
lev:long_name
lev:positive
lev:units
logfile.000000.out
lon
lon:axis
lon:long_name
lon:units
long_name
maintain_mixing_ratio
missing_value
module
,
[1]
,
[2]
,
[3]
,
[4]
,
[5]
,
[6]
,
[7]
MP_SizeResAer
MP_SizeResNum
MW_g
Name
ncdump
nco
ncview
netcdf-scripts
none
,
[1]
OutputDir/GEOSChem.HistoryCollectionName.YYYYMMDD_HHmmz.nc4
Panoply
ppbv
pressures
Radius
References
Restarts/GEOSChem.Restart.YYYYMMDD_HHmmz.cN.nc4
Snk_Horiz
Snk_Lats
Snk_Mode
Snk_Period
Snk_Value
Snk_Vert
Src_Add
Src_Horiz
Src_Lats
Src_Mode
Src_Pressures
Src_Unit
Src_Value
Src_Vert
standard
stratosphere
surface
,
[1]
time
time:axis
time:calendar
time:long_name
time:units
timestep
Title
troposphere
,
[1]
units
Units
warnings_and_errors.log
WD_AerScavEff
WD_CoarseAer
WD_ConvFacI2G
WD_ConvFacI2G_Luo
WD_Is_H2SO4
WD_Is_HNO3
WD_Is_SO2
WD_KcScaleFac
WD_KcScaleFac_Luo
WD_LiqAndGas
WD_RainoutEff
WD_RainoutEff_Luo
WD_RetFactor
xarray
compile
constant
command line option
,
[1]
Contact
command line option
Conventions
command line option
CS_RES
CXX
,
[1]
D
DD_AeroDryDep
command line option
DD_DustDryDep
command line option
DD_DvzAerSnow
command line option
DD_DvzAerSnow_Luo
command line option
DD_DvzMinVal
command line option
DD_F0
command line option
DD_Hstar_Old
command line option
DD_KOA
command line option
decay_of_another_species
command line option
Density
command line option
dependencies
E
e.g.
command line option
efolding
command line option
EGRESS
command line option
environment
environment variable
$PATH
${HOME}
,
[1]
CC
,
[1]
CS_RES
CXX
,
[1]
ESMF_COMM
ESMF_COMPILER
ESMF_DIR
,
[1]
ESMF_INSTALL_PREFIX
,
[1]
,
[2]
ESMF_ROOT
FC
,
[1]
GC_DATA_ROOT
model
MPI_ROOT
scope_args
,
[1]
scope_dir
SPACK_ROOT
,
[1]
STRETCH_FACTOR
STRETCH_GRID
TARGET_LAT
TARGET_LON
ESMF_COMM
ESMF_COMPILER
ESMF_DIR
,
[1]
ESMF_INSTALL_PREFIX
,
[1]
,
[2]
ESMF_ROOT
F
FC
,
[1]
Filename
command line option
Format
command line option
Formula
command line option
FullName
command line option
G
GC_DATA_ROOT
gchp.YYYYMMSS_HHmmSSz.log
command line option
GCPy
command line option
Globus
command line option
gregorian
command line option
gridded component
H
halflife
command line option
HEMCO
command line option
Henry_CR
command line option
Henry_CR_Luo
command line option
Henry_K0
command line option
Henry_K0_Luo
command line option
Henry_pKa
command line option
HISTORY
History
command line option
HistoryCollectionName.rcx
command line option
HTTP
command line option
I
Is_Advected
command line option
Is_Aerosol
command line option
Is_DryAlt
command line option
Is_DryDep
command line option
Is_Gas
command line option
Is_Hg0
command line option
Is_Hg2
command line option
Is_HgP
command line option
Is_HygroGrowth
command line option
Is_Photolysis
command line option
Is_RadioNuclide
command line option
Is_Tracer
command line option
L
lat
command line option
lat:axis
command line option
lat:long_name
command line option
lat:units
command line option
lat_zone
command line option
,
[1]
lev
command line option
lev:axis
command line option
lev:long_name
command line option
lev:positive
command line option
lev:units
command line option
logfile.000000.out
command line option
lon
command line option
lon:axis
command line option
lon:long_name
command line option
lon:units
command line option
long_name
command line option
M
maintain_mixing_ratio
command line option
missing_value
command line option
model
module
command line option
,
[1]
,
[2]
,
[3]
,
[4]
,
[5]
,
[6]
,
[7]
MP_SizeResAer
command line option
MP_SizeResNum
command line option
MPI_ROOT
MW_g
command line option
N
Name
command line option
ncdump
command line option
nco
command line option
ncview
command line option
netcdf-scripts
command line option
none
command line option
,
[1]
O
OutputDir/GEOSChem.HistoryCollectionName.YYYYMMDD_HHmmz.nc4
command line option
P
Panoply
command line option
ppbv
command line option
pressures
command line option
R
Radius
command line option
References
command line option
relative path
restart file
Restarts/GEOSChem.Restart.YYYYMMDD_HHmmz.cN.nc4
command line option
run directory
S
scope_args
,
[1]
scope_dir
script
Snk_Horiz
command line option
Snk_Lats
command line option
Snk_Mode
command line option
Snk_Period
command line option
Snk_Value
command line option
Snk_Vert
command line option
software environment
SPACK_ROOT
,
[1]
Src_Add
command line option
Src_Horiz
command line option
Src_Lats
command line option
Src_Mode
command line option
Src_Pressures
command line option
Src_Unit
command line option
Src_Value
command line option
Src_Vert
command line option
standard
command line option
stratosphere
command line option
STRETCH_FACTOR
STRETCH_GRID
stretched-grid
surface
command line option
,
[1]
T
target face
TARGET_LAT
TARGET_LON
terminal
time
command line option
time:axis
command line option
time:calendar
command line option
time:long_name
command line option
time:units
command line option
timestep
command line option
Title
command line option
troposphere
command line option
,
[1]
U
Units
command line option
units
command line option
W
warnings_and_errors.log
command line option
WD_AerScavEff
command line option
WD_CoarseAer
command line option
WD_ConvFacI2G
command line option
WD_ConvFacI2G_Luo
command line option
WD_Is_H2SO4
command line option
WD_Is_HNO3
command line option
WD_Is_SO2
command line option
WD_KcScaleFac
command line option
WD_KcScaleFac_Luo
command line option
WD_LiqAndGas
command line option
WD_RainoutEff
command line option
WD_RainoutEff_Luo
command line option
WD_RetFactor
command line option
X
xarray
command line option