Index

Symbols

$HOME $PATH ${HOME}, [1] &fms_nml command line option &fv_core_nml command line option 0.125x0.15625 command line option 0.25x0.3125 command line option

0.5x0.625 command line option 2.0x2.5 command line option 4.0x5.0 command line option 40 command line option 47 command line option 72 command line option

A

absolute path absolute_threshold command line option acc_interval command line option activate command line option, [1], [2], [3], [4], [5], [6], [7], [8], [9], [10] AdvCore_Advection command line option

aerosol command line option all command line option allow_homogeneous_NAT command line option allPES.log command line option

B

batch command line option BEG_DATE command line option BKG_FREQUENCY command line option

buffer_zone_NSEW command line option build build directory

C

calc_strat_aod command line option cap_restart command line option carbon command line option CC, [1] center_at_180 command line option checkpoint file Clim command line option cloud_overlap_correlation command line option cloud_scheme_flag command line option cloudj_input_dir command line option CMAKE_BUILD_TYPE command line option CMAKE_PREFIX_PATH command line option CO2_level command line option command line option &fms_nml &fv_core_nml 0.125x0.15625 0.25x0.3125 0.5x0.625 2.0x2.5 4.0x5.0 40 47 72 absolute_threshold acc_interval activate, [1], [2], [3], [4], [5], [6], [7], [8], [9], [10] AdvCore_Advection aerosol all allow_homogeneous_NAT allPES.log batch BEG_DATE BKG_FREQUENCY buffer_zone_NSEW calc_strat_aod cap_restart carbon center_at_180 Clim cloud_overlap_correlation cloud_scheme_flag cloudj_input_dir CMAKE_BUILD_TYPE CMAKE_PREFIX_PATH CO2_level Conservative conservative CoresPerNode CORRECT_MASS_FLUX_FOR_HUMIDITY DATELINE do_schmidt domain_stack_size duration DYCORE DYN_INTERNAL_CHECKPOINT_FILE DYN_INTERNAL_CHECKPOINT_TYPE DYN_INTERNAL_HEADER DYN_INTERNAL_RESTART_FILE DYN_INTERNAL_RESTART_TYPE DYNAMICS_DT e.g. EGRESS END_DATE end_date end_time EXPDSC EXPID Ext_AllowExtrap External, [1] false, [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11], [12], [13], [14], [15], [16], [17], [18], [19], [20], [21], [22], [23], [24], [25], [26], [27], [28], [29], [30], [31], [32], [33], [34], [35], [36], [37], [38], [39], [40], [41], [42], [43], [44], [45], [46], [47], [48], [49], [50], [51], [52], [53], [54], [55], [56], [57], [58], [59], [60], [61], [62], [63], [64], [65] FASTJX fastjx_input_dir fields fill_negative_values format frequency fullchem GCAP2 GCHP.GRID_TYPE GCHP.GRIDNAME GCHP.IM GCHP.IM_WORLD GCHP.JM GCHP.LM GCHP.NF GCHP.STRETCH_FACTOR GCHP.TARGET_LAT GCHP.TARGET_LON gchp.YYYYMMSS_HHmmSSz.log GCHPchem_DT GCHPchem_INTERNAL_CHECKPOINT_FILE GCHPchem_INTERNAL_CHECKPOINT_TYPE GCHPchem_INTERNAL_HEADER GCHPchem_INTERNAL_RESTART_FILE GCHPchem_INTERNAL_RESTART_TYPE GCHPchem_REFERENCE_TIME GEOChem_CTM GEOS-FP GEOS-IT GEOSChem_Fortran_FLAGS_<BUILD_TYPE>_<COMPILER_ID> GEOSChem_Fortran_FLAGS_<COMPILER_ID> gregorian grid_label GRID_TYPE HEARTBEAT_DT, [1] HEMCO_CONFIG HEMCO_Fortran_FLAGS_<BUILD_TYPE>_<COMPILER_ID> HEMCO_Fortran_FLAGS_<COMPILER_ID> het_chem Hg HIST_CF HistoryCollectionName.rcx hydrophilic hydrophobic IM IM_WORLD IMPORT_MASS_FLUX_FROM_EXTDATA INITIAL_RESTART_SPECIES_REQUIRED input_dir INSTALLCOPY IRRAD_DT IRRADAvrg JM JM_WORLD JOB_SGMT KPP/carbon KPP/custom KPP/fullchem KPP/Hg lat:axis lat:long_name lat:units LAT_RANGE lev:axis lev:long_name lev:positive lev:units levels: LM logfile.000000.out lon:axis lon:long_name lon:units LON_RANGE MAPL_ENABLE_BOOTSTRAP MAPL_ENABLE_MEMUTILS MAPL_ENABLE_TIMERS MEMORY_DEBUG_LEVEL MERRA2 metals METEOROLOGY_VERTICAL_INDEX_IS_TOP_DOWN min_top_inserted_cloud_OD mode MODEL_PHASE module, [1], [2], [3], [4], [5], [6], [7] monthly Name NIT_Jscale NITs_Jscale no2 num_cloud_overlap_blocks num_levs_with_cloud NUM_READERS num_wavelength_bins NUM_WRITERS NX NY Offset oh_tuning_factor OMP on_cores opt_depth_increase_factor OutputDir/GEOSChem.HistoryCollectionName.YYYYMMDD_HHmmz.nc4 PARALLEL_READFORCING percent_channel_A_HONO percent_channel_B_HO2 POLE POPs print_memory_usage PRINTRC PRINTSPEC range, [1] RECORD_FREQUENCY RECORD_REF_DATE RECORD_REF_TIME recycle_track ref_date ref_time Reference reference_CO2_level Refresh Restarts/GEOSChem.Restart.YYYYMMDD_HHmmz.cN.nc4 REVERSE_TIME root ROOT_CF ROOT_NAME RRTMG RRTMG_DT RUN_DT RUN_PHASES RUNDIR Scale scale_by_pressure SOLAR_DT SOLARAvrg sphere_correction standard STDOUT_LOGFILE STDOUT_LOGLUN stretch_fac supersat_factor_req_for_ice_nucl tagO3 target_lat target_lon template time:axis time:calendar time:long_name time:units timeStampStart track_file TransportTracers true, [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11], [12], [13], [14], [15], [16], [17], [18], [19], [20], [21], [22], [23], [24], [25], [26], [27], [28], [29], [30], [31], [32], [33], [34], [35], [36], [37], [38], [39], [40], [41], [42], [43], [44], [45], [46], [47], [48], [49], [50], [51], [52], [53], [54], [55], [56], [57], [58], [59], [60], [61], [62], [63], [64], [65], [66], [67], [68], [69] Units use_column_O3_from_met USE_EXTDATA2G use_H2O_UV_absorption use_halfpolar_boxes use_linoz_for_O3 use_online_O3_from_model USE_SHMEM use_static_bnd_cond use_target_threshold use_TOMS_SBUV_O3 USE_TOTAL_AIR_PRESSURE_IN_ADVECTION verbose VERSION warnings_and_errors.log WRITE_RESTART_BY_OSERVER

compile Conservative command line option conservative command line option CoresPerNode command line option CORRECT_MASS_FLUX_FOR_HUMIDITY command line option CS_RES CXX, [1]

D

DATELINE command line option dependencies do_schmidt command line option domain_stack_size command line option duration command line option DYCORE command line option

DYN_INTERNAL_CHECKPOINT_FILE command line option DYN_INTERNAL_CHECKPOINT_TYPE command line option DYN_INTERNAL_HEADER command line option DYN_INTERNAL_RESTART_FILE command line option DYN_INTERNAL_RESTART_TYPE command line option DYNAMICS_DT command line option

E

e.g. command line option EGRESS command line option END_DATE command line option end_date command line option end_time command line option environment environment variable $HOME $PATH ${HOME}, [1] CC, [1] CS_RES CXX, [1] ESMF_COMM ESMF_COMPILER ESMF_DIR, [1] ESMF_INSTALL_PREFIX, [1], [2] ESMF_ROOT FC, [1] GC_DATA_ROOT model MPI_ROOT scope_args, [1] scope_dir SPACK_ROOT, [1] STRETCH_FACTOR STRETCH_GRID TARGET_LAT TARGET_LON use_target_threshold:activate

ESMF_COMM ESMF_COMPILER ESMF_DIR, [1] ESMF_INSTALL_PREFIX, [1], [2] ESMF_ROOT EXPDSC command line option EXPID command line option Ext_AllowExtrap command line option External command line option, [1]

F

false command line option, [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11], [12], [13], [14], [15], [16], [17], [18], [19], [20], [21], [22], [23], [24], [25], [26], [27], [28], [29], [30], [31], [32], [33], [34], [35], [36], [37], [38], [39], [40], [41], [42], [43], [44], [45], [46], [47], [48], [49], [50], [51], [52], [53], [54], [55], [56], [57], [58], [59], [60], [61], [62], [63], [64], [65] FASTJX command line option fastjx_input_dir command line option FC, [1] fields command line option

fill_negative_values command line option format command line option frequency command line option fullchem command line option

G

GC_DATA_ROOT GCAP2 command line option GCHP.GRID_TYPE command line option GCHP.GRIDNAME command line option GCHP.IM command line option GCHP.IM_WORLD command line option GCHP.JM command line option GCHP.LM command line option GCHP.NF command line option GCHP.STRETCH_FACTOR command line option GCHP.TARGET_LAT command line option GCHP.TARGET_LON command line option gchp.YYYYMMSS_HHmmSSz.log command line option GCHPchem_DT command line option GCHPchem_INTERNAL_CHECKPOINT_FILE command line option

GCHPchem_INTERNAL_CHECKPOINT_TYPE command line option GCHPchem_INTERNAL_HEADER command line option GCHPchem_INTERNAL_RESTART_FILE command line option GCHPchem_INTERNAL_RESTART_TYPE command line option GCHPchem_REFERENCE_TIME command line option GEOChem_CTM command line option GEOS-FP command line option GEOS-IT command line option GEOSChem_Fortran_FLAGS_<BUILD_TYPE>_<COMPILER_ID> command line option GEOSChem_Fortran_FLAGS_<COMPILER_ID> command line option gregorian command line option grid_label command line option GRID_TYPE command line option gridded component

H

HEARTBEAT_DT command line option, [1] HEMCO_CONFIG command line option HEMCO_Fortran_FLAGS_<BUILD_TYPE>_<COMPILER_ID> command line option HEMCO_Fortran_FLAGS_<COMPILER_ID> command line option het_chem command line option

Hg command line option HIST_CF command line option HISTORY HistoryCollectionName.rcx command line option hydrophilic command line option hydrophobic command line option

I

IM command line option IM_WORLD command line option IMPORT_MASS_FLUX_FROM_EXTDATA command line option INITIAL_RESTART_SPECIES_REQUIRED command line option

input_dir command line option INSTALLCOPY command line option IRRAD_DT command line option IRRADAvrg command line option

J

JM command line option JM_WORLD command line option

JOB_SGMT command line option

K

KPP/carbon command line option KPP/custom command line option

KPP/fullchem command line option KPP/Hg command line option

L

lat:axis command line option lat:long_name command line option lat:units command line option LAT_RANGE command line option lev:axis command line option lev:long_name command line option lev:positive command line option lev:units command line option

levels: command line option LM command line option logfile.000000.out command line option lon:axis command line option lon:long_name command line option lon:units command line option LON_RANGE command line option

M

MAPL_ENABLE_BOOTSTRAP command line option MAPL_ENABLE_MEMUTILS command line option MAPL_ENABLE_TIMERS command line option MEMORY_DEBUG_LEVEL command line option MERRA2 command line option metals command line option METEOROLOGY_VERTICAL_INDEX_IS_TOP_DOWN command line option

min_top_inserted_cloud_OD command line option mode command line option model MODEL_PHASE command line option module command line option, [1], [2], [3], [4], [5], [6], [7] monthly command line option MPI_ROOT

N

Name command line option NIT_Jscale command line option NITs_Jscale command line option no2 command line option num_cloud_overlap_blocks command line option num_levs_with_cloud command line option

NUM_READERS command line option num_wavelength_bins command line option NUM_WRITERS command line option NX command line option NY command line option

O

Offset command line option oh_tuning_factor command line option OMP command line option

on_cores command line option opt_depth_increase_factor command line option OutputDir/GEOSChem.HistoryCollectionName.YYYYMMDD_HHmmz.nc4 command line option

P

PARALLEL_READFORCING command line option percent_channel_A_HONO command line option percent_channel_B_HO2 command line option POLE command line option

POPs command line option print_memory_usage command line option PRINTRC command line option PRINTSPEC command line option

R

range command line option, [1] RECORD_FREQUENCY command line option RECORD_REF_DATE command line option RECORD_REF_TIME command line option recycle_track command line option ref_date command line option ref_time command line option Reference command line option reference_CO2_level command line option Refresh command line option relative path

restart file Restarts/GEOSChem.Restart.YYYYMMDD_HHmmz.cN.nc4 command line option REVERSE_TIME command line option root command line option ROOT_CF command line option ROOT_NAME command line option RRTMG command line option RRTMG_DT command line option run directory RUN_DT command line option RUN_PHASES command line option RUNDIR command line option

S

Scale command line option scale_by_pressure command line option scope_args, [1] scope_dir script software environment SOLAR_DT command line option SOLARAvrg command line option SPACK_ROOT, [1] sphere_correction command line option

standard command line option STDOUT_LOGFILE command line option STDOUT_LOGLUN command line option stretch_fac command line option STRETCH_FACTOR STRETCH_GRID stretched-grid supersat_factor_req_for_ice_nucl command line option

T

tagO3 command line option target face TARGET_LAT target_lat command line option TARGET_LON target_lon command line option template command line option terminal time:axis command line option

time:calendar command line option time:long_name command line option time:units command line option timeStampStart command line option track_file command line option TransportTracers command line option true command line option, [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11], [12], [13], [14], [15], [16], [17], [18], [19], [20], [21], [22], [23], [24], [25], [26], [27], [28], [29], [30], [31], [32], [33], [34], [35], [36], [37], [38], [39], [40], [41], [42], [43], [44], [45], [46], [47], [48], [49], [50], [51], [52], [53], [54], [55], [56], [57], [58], [59], [60], [61], [62], [63], [64], [65], [66], [67], [68], [69]

U

Units command line option use_column_O3_from_met command line option USE_EXTDATA2G command line option use_H2O_UV_absorption command line option use_halfpolar_boxes command line option use_linoz_for_O3 command line option

use_online_O3_from_model command line option USE_SHMEM command line option use_static_bnd_cond command line option use_target_threshold command line option use_target_threshold:activate use_TOMS_SBUV_O3 command line option USE_TOTAL_AIR_PRESSURE_IN_ADVECTION command line option

V

verbose command line option

VERSION command line option

W

warnings_and_errors.log command line option

WRITE_RESTART_BY_OSERVER command line option